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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_627214_627411_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
627214 - 627411
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGCATG
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGCTTCAGATCA
Flanking Amino Acid:
SKKKESQLQEADLQVDKERH
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.5
41.4
Major BPS
74.1
0.6
1
69
38.9
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
43.6
-0.7
2.8
56.4
48
Minor BPS
45
-0.3
1.9
57.6
41.6

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000