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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6295155_6295292_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6295155 - 6295292
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CCGTTTGGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
CTTCCCTCCCCT
Flanking Amino Acid:
RRWSGMAYCRQIRCHVLPAV
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
64.2
0.32
1
56.5
43.4
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
38.4
-0.8
3.6
69.41
47.1

Associated Gene:

Gene:
SRPX2
Ensembl Gene ID:
ENSAPLG00000008584
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008924
6294730 - 6297229
2500