About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6303956_6304131_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6303956 - 6304131
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTGTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
CGGGATGTACCT
Flanking Amino Acid:
KSPQEPRKAHSLFPDASDPR
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
79.4
0.66
0.9
73
37.4
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
36.8
-0.9
2.2
48.35
45

Associated Gene:

Gene:
SYTL4
Ensembl Gene ID:
ENSAPLG00000007671
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028882
6298604 - 6308041
9438
ENSAPLT00000008022
6298604 - 6308041
9438