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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6305572_6306315_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6305572 - 6306315
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TGTCCCAGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGTCCCAGCACA
Flanking Amino Acid:
GGRSLWECERTHPAPSGKGE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
60.8
44.4
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
64.4
0.33
1
57.8
37.2
Minor 5ss
29.4
-2.4
3.3
30.1
42.9
Minor BPS
46.1
-0.3
2.1
64.12
41.3

Associated Gene:

Gene:
SYTL4
Ensembl Gene ID:
ENSAPLG00000007671
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008022
6298604 - 6308041
9438