About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6310062_6310162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6310062 - 6310162
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCGGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAG
U12 Branch Point Sequence:
AGGTGCTTGAGG
Flanking Amino Acid:
VTEPRFAQRLRRYLEEEQLL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
46.9
-0.1
1.7
45
47.8
Major PPT
72.9
0.52
0.9
65
36.3
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
45.7
-0.4
2.1
49.1
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036768
6307571 - 6310257
2687