About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6311633_6311761_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6311633 - 6311761
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTTGTCAGAGCT
Flanking Amino Acid:
QMFELMKQMKLCVQNSPQEA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
73.7
0.53
0.9
70.4
40.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
44.2
-0.3
2
65.18
45.2

Associated Gene:

Gene:
CSTF2
Ensembl Gene ID:
ENSAPLG00000007255
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007585
6310302 - 6313533
3232
ENSAPLT00000036308
6310302 - 6313533
3232