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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6312376_6312700_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6312376 - 6312700
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GGGATCTGACCT
Flanking Amino Acid:
GPGPGPMAPGGGLQPQVGIP
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
86.9
0.83
0.6
85.2
22.2
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
46
-0.2
1.7
58.89
43.8

Associated Gene:

Gene:
CSTF2
Ensembl Gene ID:
ENSAPLG00000007255
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007585
6310302 - 6313533
3232