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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6312619_6312700_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6312619 - 6312700
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GGGATCTGACCT
Flanking Amino Acid:
FRMLPQDLGGGGLQPQVGIP
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.8
38.5
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
86.9
0.83
0.6
85.2
22.2
Minor 5ss
39.8
-1.1
3.2
51.2
45.5
Minor BPS
46
-0.2
1.7
58.89
43.8

Associated Gene:

Gene:
CSTF2
Ensembl Gene ID:
ENSAPLG00000007255
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036308
6310302 - 6313533
3232