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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6318633_6318804_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6318633 - 6318804
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
CCGCTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGGTCCTCACCC
Flanking Amino Acid:
LFLTGWDTSIANNAALHHDT
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
58.4
43.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
67.3
0.39
1
61
35.1
Minor 5ss
35.7
-1.6
2.8
40.8
40
Minor BPS
50.1
-0
1.9
60.36
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006524
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006806
6318294 - 6322785
4492