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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6318952_6319103_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6318952 - 6319103
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCT
5'SS Class:
major
3'SS Sequence:
CATTGCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TCTTGAGTAACG
Flanking Amino Acid:
QADQTLKTKKIYFYWLCRDT
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
62.3
41.3
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
68.8
0.42
1
58.7
41.5
Minor 5ss
36.3
-1.5
3.8
56.7
47.5
Minor BPS
45
-0.5
2.6
59.99
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006524
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006806
6318294 - 6322785
4492