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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6319267_6319346_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6319267 - 6319346
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
CTCCCTTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGCCTCTCACCC
Flanking Amino Acid:
TFQQQKPEMPRIEVDGPFGT
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
65.7
0.35
1
60.3
40.3
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
46.9
-0.2
1.8
56.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006524
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006806
6318294 - 6322785
4492