Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6319583_6319865_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6319583 - 6319865

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGCACAGC

5'SS Class:

weak_major

3'SS Sequence:

CCCTGCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGGTGCTGAGCC

Flanking Amino Acid:

PAPFSTPLVGVIMHPAKVLE

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.14

1.1

47.6

43.1

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

67.3

0.39

0.8

57.3

33.4

Minor 5ss

32.1

-2

3.1

41.7

Minor BPS

44.5

-0.4

2.1

53.03

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006524

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006806

6318294 - 6322785

4492