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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6320897_6320976_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6320897 - 6320976
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCAAC
U12 Branch Point Sequence:
CCTGCCCCAACC
Flanking Amino Acid:
LLSFLRGTCSCCRRTLRKQL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
44.9
-0.3
1.2
48
33
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
47.5
-0.2
2
59.14
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006524
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006806
6318294 - 6322785
4492