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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6324915_6325625_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6324915 - 6325625
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
ACTGCCTGACTC
Flanking Amino Acid:
ILEKYVPTARAVLMGICLVS
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
79.7
0.67
0.8
73.3
31.6
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
47.9
-0.1
1.8
57.03
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006318
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006546
6324172 - 6327903
3732