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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_633627_635557_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
633627 - 635557
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCGCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTCCTGTAATT
Flanking Amino Acid:
QEVELERSMMVQNASDLLIK
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
66.6
0.37
0.8
62.8
33.1
Minor 5ss
38.4
-1.3
3
45.7
43.4
Minor BPS
57.4
0.31
2
77.88
38.9

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000