About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6336986_6337292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6336986 - 6337292
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CCCCATGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTCTCCCCATGC
Flanking Amino Acid:
HPDVSGKPLLLLANKQDVAA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
57.7
46.6
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
62.6
0.28
0.9
52.7
36.4
Minor 5ss
37.3
-1.4
3.5
57.5
46.6
Minor BPS
43
-0.5
2.3
59.12
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031098
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029555
6335947 - 6338404
2458