About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6337399_6337486_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6337399 - 6337486
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
CCCCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GCTCCCCCATCC
Flanking Amino Acid:
VNENRSPCRIEPCAAAGPAR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
61.9
39.6
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
66.8
0.38
0.8
57.2
32.2
Minor 5ss
36.6
-1.5
2.9
44.2
38.1
Minor BPS
43.2
-0.5
2
54.02
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031098
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029555
6335947 - 6338404
2458