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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_635620_639292_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
635620 - 639292
Intron Length:
3673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACTTGCTGATCC
Flanking Amino Acid:
DTLTDDEINIAESFKEFAEL
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
47.5
-0.2
2.1
61.44
43.8

Associated Gene:

Gene:
OPHN1
Ensembl Gene ID:
ENSAPLG00000006763
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007059
606686 - 656685
50000