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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6356972_6363933_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6356972 - 6363933
Intron Length:
6962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTCT
5'SS Class:
major
3'SS Sequence:
GTTGCCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
GTTGCCCCAACA
Flanking Amino Acid:
DSAWERGLSQCAGEEKRVGT
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
70.3
36.3
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
66.1
0.36
1
59.3
37
Minor 5ss
41.1
-1
3
57.2
47
Minor BPS
51.8
0.05
2
69.53
42.3

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000023165
6356311 - 6399666
43356