Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6360054_6363933_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6360054 - 6363933

Intron Length:

3880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

GTTGCCCCAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

GTTGCCCCAACA

Flanking Amino Acid:

MWSVWCAGEEKRVGT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

68.9

43.8

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

66.1

0.36

59.3

Minor 5ss

38.3

-1.3

2.8

40.4

45.5

Minor BPS

51.8

0.05

69.53

42.3

Associated Gene:

Gene:

ATP11C

Ensembl Gene ID:

ENSAPLG00000005048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047315

6360039 - 6401963

41925

ENSAPLT00000023379

6360039 - 6401963

41925