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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6364054_6365708_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6364054 - 6365708
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTCCAA
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
FCDNRIVSSKYTIWNFLPKN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
52.9
0.07
1.4
64.5
42.8
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023379
6360039 - 6401963
41925
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469