Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6370353_6371394_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6370353 - 6371394

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTATATGCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

GTTGCCTGTATT

Flanking Amino Acid:

FVITVTAIKQGYEDWLRHRA

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

88.7

0.96

0.8

36.5

Major PPT

69.3

0.44

62.7

43.2

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

51.9

0.14

1.9

73.51

43.2

Associated Gene:

Gene:

ATP11C

Ensembl Gene ID:

ENSAPLG00000005048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035067

6356198 - 6399666

43469

ENSAPLT00000023379

6360039 - 6401963

41925

ENSAPLT00000023165

6356311 - 6399666

43356

ENSAPLT00000047315

6360039 - 6401963

41925

ENSAPLT00000005291

6356198 - 6403223

47026

ENSAPLT00000041998

6356311 - 6400777

44467