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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6374726_6375358_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6374726 - 6375358
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACTTTTTAATT
Flanking Amino Acid:
ECEQPQPDLYKFVGRIIIYR
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.7
0.85
0.8
82.6
32.6
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
72.9
0.8
1.1
80
36.6

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023379
6360039 - 6401963
41925
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469