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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6378584_6379946_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6378584 - 6379946
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAACG
5'SS Class:
major
3'SS Sequence:
CCCTTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTACAG
U12 Branch Point Sequence:
GTCCCCTTGCTT
Flanking Amino Acid:
TSDLNEELGQVEFVFTDKTG
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
69
41.8
Major BPS
44
-0.3
1.5
52.5
43.3
Major PPT
73.4
0.53
0.8
64.8
36.5
Minor 5ss
29.2
-2.4
2.6
33
41.5
Minor BPS
43.5
-0.4
3.4
69.11
42.2

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035067
6356198 - 6399666
43469
ENSAPLT00000023379
6360039 - 6401963
41925
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467