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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6381146_6381755_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6381146 - 6381755
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTGTTTATTG
Flanking Amino Acid:
KIRNQKNETEMYQLLHILNF
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
66.4
0.37
1.2
72.4
41.9
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
53.5
-0
2.1
66.47
42.4

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469
ENSAPLT00000023379
6360039 - 6401963
41925