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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6383500_6384535_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6383500 - 6384535
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGATCAGTCACA
Flanking Amino Acid:
HLIGATAVEDRLQEQSAETI
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
75.6
0.58
0.9
73.2
36.1
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
44.2
-0.4
2.5
62.27
43.4

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469
ENSAPLT00000023379
6360039 - 6401963
41925