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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6385346_6386525_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6385346 - 6386525
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
CTAAATTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTCTAAATT
Flanking Amino Acid:
CRMAPLQKAQIVRMVKNTKG
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
0.9
69.7
40.9
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
67.9
0.64
1.7
82.74
39.5

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469
ENSAPLT00000023379
6360039 - 6401963
41925