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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6388256_6388676_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6388256 - 6388676
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TCCCTGCTAACC
Flanking Amino Acid:
AHLVQYFFYKNLCFILPQFL
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
83.4
0.75
0.8
76.8
37.4
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
44
-0.4
2.3
55.66
42.8

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023165
6356311 - 6399666
43356
ENSAPLT00000047315
6360039 - 6401963
41925
ENSAPLT00000005291
6356198 - 6403223
47026
ENSAPLT00000041998
6356311 - 6400777
44467
ENSAPLT00000035067
6356198 - 6399666
43469
ENSAPLT00000023379
6360039 - 6401963
41925