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Intron Name: Anas_platyrhynchos_platyrhynchos_10_6396213_6398409_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6396213 - 6398409

Intron Length:

2197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TGTTGTGAACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

CTGTTGTGAACT

Flanking Amino Acid:

FKKYKREKSSGNEAPSFLRN

Intron Amino Acid Position:

1113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

58.9

0.2

1.1

52.3

46.2

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

49.8

0.06

2.2

71.85

45.3

Associated Gene:

Gene:

ATP11C

Ensembl Gene ID:

ENSAPLG00000005048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041998

6356311 - 6400777

44467

ENSAPLT00000035067

6356198 - 6399666

43469

ENSAPLT00000023165

6356311 - 6399666

43356