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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6396213_6400749_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6396213 - 6400749
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTGATTT
Flanking Amino Acid:
LKNIKEKSHQTGPFDLPMLV
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
50.9
0.11
1.7
67.65
44

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047315
6360039 - 6401963
41925