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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6399667_6400749_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
6399667 - 6400749
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTGT
5'SS Class:
weak_major
3'SS Sequence:
CTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTGATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
60.8
46.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
50.3
0.01
2.9
74.2
42.1
Minor BPS
50.9
0.11
1.7
67.65
44

Associated Gene:

Gene:
ATP11C
Ensembl Gene ID:
ENSAPLG00000005048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023379
6360039 - 6401963
41925