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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6408573_6419606_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6408573 - 6419606
Intron Length:
11034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
AAALLEAAAAETAIPICAKD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000046656
6408456 - 6465924
57469