About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6442314_6442464_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6442314 - 6442464
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCTTTTTCACT
Flanking Amino Acid:
FESVLTPELKCQIQSVQVKL
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.8
76.9
31.5
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
60.6
0.42
1.7
77.06
40.2

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022571
6415662 - 6465924
50263
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469