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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6449686_6450243_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6449686 - 6450243
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGCTCTTGCATT
Flanking Amino Acid:
RLTKYQLLLKELLKYSTSCD
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
49.2
0.02
1.9
68.97
42.6

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469
ENSAPLT00000022571
6415662 - 6465924
50263