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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6450370_6451182_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6450370 - 6451182
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTCTCCATATTT
Flanking Amino Acid:
MHQISITGYDGDLSELGKVL
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.2
0.54
1
67.7
42.8
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
52.9
0.17
1.9
72.34
45

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022571
6415662 - 6465924
50263
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469