Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6451405_6454983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6451405 - 6454983

Intron Length:

3579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTAAT

U12 Branch Point Sequence:

GCATGTGTAATT

Flanking Amino Acid:

SSYSFKHFLKMNAVGITENV

Intron Amino Acid Position:

868

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

78.9

34.8

Major BPS

66.7

0.41

1.4

69.7

44.2

Major PPT

96.2

1.04

0.5

92.4

17.6

Minor 5ss

36.6

-1.5

3.3

50.4

39.9

Minor BPS

44.6

-0.3

2.3

60.56

43.9

Associated Gene:

Gene:

MCF2

Ensembl Gene ID:

ENSAPLG00000004315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018870

6408456 - 6457479

49024

ENSAPLT00000004481

6408456 - 6460282

51827

ENSAPLT00000047384

6426255 - 6465924

39670

ENSAPLT00000046656

6408456 - 6465924

57469

ENSAPLT00000022571

6415662 - 6465924

50263