About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6455077_6456060_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6455077 - 6456060
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TAATTCAAAATT
Flanking Amino Acid:
SGREEVYVVQAQTVDLKMAW
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
39.9
-1.1
2.5
52.3
44.2
Minor BPS
49.6
0.05
1.9
70.54
40.5

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469
ENSAPLT00000022571
6415662 - 6465924
50263