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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6456140_6456679_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6456140 - 6456679
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
GACCTCCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGATGTTAAACT
Flanking Amino Acid:
ILFKQQELIKVEKQQPGSCT
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
70
0.45
0.9
61.5
34.7
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
48.9
-0
2
67.65
43.2

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469
ENSAPLT00000022571
6415662 - 6465924
50263