About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6456744_6457005_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6456744 - 6457005
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTAATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATC
Flanking Amino Acid:
QLHLSSQLSDGKQQRASISS
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.7
0.78
0.8
81.6
35.6
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
77.2
0.83
1
79.83
28.4

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469
ENSAPLT00000022571
6415662 - 6465924
50263