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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6457302_6457408_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6457302 - 6457408
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTACA
5'SS Class:
major
3'SS Sequence:
CTCCATGTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTCACTGGATA
Flanking Amino Acid:
DTEEEEGNQLFFHISIWRMR
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
74.5
35.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.2
0.48
0.9
68
37.2
Minor 5ss
32.5
-2
2.4
33.7
34.6
Minor BPS
48.7
-0.1
1.7
61.6
38.3

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018870
6408456 - 6457479
49024