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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6457694_6459057_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6457694 - 6459057
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTTCTTTTACT
Flanking Amino Acid:
QLLHEDGEGQWLVKNLNRRK
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.5
0.44
1.1
70.4
39.2
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
74.6
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022571
6415662 - 6465924
50263
ENSAPLT00000004481
6408456 - 6460282
51827
ENSAPLT00000047384
6426255 - 6465924
39670
ENSAPLT00000046656
6408456 - 6465924
57469