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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6459159_6460204_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6459159 - 6460204
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATAT
5'SS Class:
weak_major
3'SS Sequence:
TCATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCT
Flanking Amino Acid:
DCRFRNAKVAGHSNFTDFFL
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.2
70.3
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.7
81.4
30.3
Minor 5ss
54.4
0.15
2.6
73.4
43.4
Minor BPS
69.5
0.69
1.5
84.41
36.4

Associated Gene:

Gene:
MCF2
Ensembl Gene ID:
ENSAPLG00000004315
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004481
6408456 - 6460282
51827