Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6467094_6469800_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6467094 - 6469800

Intron Length:

2707

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCCCAT

U12 Branch Point Sequence:

CCAGCCCAAGCC

Flanking Amino Acid:

QSGDNIMAVAGEYNTKEDDN

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

80.5

33.9

Major BPS

49.3

-0

1.3

58.2

40.4

Major PPT

93.2

0.97

0.6

89.1

19.8

Minor 5ss

36.6

-1.5

2.9

49.5

46.5

Minor BPS

38.5

-0.8

2.1

43.22

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010848

6466546 - 6480766

14221