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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6471503_6473265_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6471503 - 6473265
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAACTT
5'SS Class:
major
3'SS Sequence:
ATTTCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
CCAGGGATAACT
Flanking Amino Acid:
QEDGKSCEPTVPYPCGRITA
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
70
40.3
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
81.8
0.72
0.8
73.9
36.1
Minor 5ss
33.6
-1.9
3.3
48.7
46.9
Minor BPS
37.8
-0.8
2.5
52.77
48

Associated Gene:

Gene:
F9
Ensembl Gene ID:
ENSAPLG00000010425
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010848
6466546 - 6480766
14221