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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6473395_6475183_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6473395 - 6475183
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
AGYEGKNCEIDFTCAIKNGG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.1
0.77
0.8
81.7
35.4
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
F9
Ensembl Gene ID:
ENSAPLG00000010425
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010848
6466546 - 6480766
14221