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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6477289_6477617_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6477289 - 6477617
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTGAGTGAAAT
Flanking Amino Acid:
REVFENTEKTMEFWKTYIDG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
42.8
-0.4
2.3
65.75
44.2

Associated Gene:

Gene:
F9
Ensembl Gene ID:
ENSAPLG00000010425
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010848
6466546 - 6480766
14221