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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6477782_6480699_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6477782 - 6480699
Intron Length:
2918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAT
Flanking Amino Acid:
LEAFLGAESTVFIENKEASA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
33.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78
0.63
0.9
71.1
38.3
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
59.2
0.37
1.6
76.7
40.1

Associated Gene:

Gene:
F9
Ensembl Gene ID:
ENSAPLG00000010425
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010848
6466546 - 6480766
14221