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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6532071_6533133_F

Intron Information:

Intron Rank:
130928
Intron Class:
major
Intron Phase:
Intron Coordinates:
6532071 - 6533133
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCGGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TTCGCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
73.1
0.52
1
68.7
37.2
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
52.3
0.15
1.9
72.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020022
6531574 - 6546646
15073