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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_6533287_6546561_F

Intron Information:

Intron Rank:
130929
Intron Class:
major
Intron Phase:
Intron Coordinates:
6533287 - 6546561
Intron Length:
13275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TCTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTATAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
80.9
0.7
0.7
73.2
31.7
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
49.5
0.04
1.9
73.23
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020311
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020022
6531574 - 6546646
15073