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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_659726_660419_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
659726 - 660419
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAGTATTT
Flanking Amino Acid:
VMAMFGWSTLASTAFLADSQ
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.2
0.52
0.9
66.1
39.6
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
41.3
-0.5
2.4
67.66
43

Associated Gene:

Gene:
YIPF6
Ensembl Gene ID:
ENSAPLG00000007545
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007830
656706 - 660795
4090